Membrane Flush and Winterization Guide

Freshwater rinse, long lay-up and end-of-season protection

During production your watermaker membrane is exposed to seawater under high pressure. Salt left in the circuit after a run reduces output and shortens life — freshwater flushing limits that risk. If the unit will be unused for more than 4 weeks, winterisation is required to prevent bacterial growth inside the membranes, as stated in our FAQ.

Flushing and winterisation are different tasks: one is in-season routine, the other protects during long lay-up. For the full maintenance calendar see Watermaker Maintenance Guide; for step-by-step lists see the end-of-season and pre-season checklists.

Quick Rules
  • Freshwater flush after production
  • Lay-up 4+ weeks → lay-up chemical
  • Tune auto flush to your profile
  • Book on-site service for season closing

Flush vs Winterisation — What's the Difference?

Freshwater flush Winterisation (lay-up)
Purpose Reduce salt build-up in the membrane circuit Prevent biofouling and drying during long idle periods
When After each run or at regular intervals Unused more than 4 weeks — FAQ
Supply Onboard fresh water / dock supply Lay-up chemical + preservative application
Duration example Short rinse (5–10 min routine; 15 min at season end) End-of-season checklist steps
Materials Fresh water only Lay-up chemical from stock

Short marina or anchorage breaks (under 4 weeks) usually need flushing only, not full winterisation. When approaching the limit, planning service is safer.

Freshwater Flush — How Often and How?

Flushing circulates fresh water through the membrane and pressure path to remove salt residue. Missed flush is listed among causes of early membrane failure in our spare parts guide — replacement schedule.

Manual flush

If auto flush is off or you need an extra rinse on a short stop: stop production and run fresh water through the membrane circuit for 5–10 minutes.

Flush and check quality before sending product water to the tank — water tank + watermaker planning.

Automatic reverse flush (auto flush)

SCW-30 has automatic reverse flush with timed re-flush. On SCW-100 and larger models, reverse flush can be scheduled or disabled by the user to optimise membrane cleaning.

Even with auto flush enabled, dirty pre-filters or a blocked brine line do not replace proper maintenance — maintenance guide.

At anchor on 12V

Post-production flush must not be skipped on 12V systems running from solar. Long continuous runs load both the battery bank and the membrane — plan a sensible operating window — 12V + solar panel guide.

Which Task When?

Daily / each run

Short fresh flush or auto flush. Brine discharge open.

1–3 week break

Extended flush before last run; filter check. Full winterisation not required.

4+ weeks idle

Lay-up chemical application — FAQ threshold.

Season end

15 min flush, drain, preservative, filter removal — checklist.

Winterisation Steps (End of Season)

The flow below matches the end-of-season checklist. Chemical dosing and exact sequence depend on your model and are confirmed during service or from the operating instructions — applied together at a booked visit.

  1. Final freshwater flush — checklist recommends 15 minutes.
  2. Stop and drain the system — depressurise safely.
  3. Apply preservative — lay-up chemical (pickling solution) protects the membrane.
  4. Remove or replace pre-filters — stored filters can foul.
  5. Isolate power — per unit instructions.
  6. Book service — especially for wintering boats from October onwards.

Full list: End-of-Season Winterization Checklist.

Bodrum & Göcek — on-site package

Bodrum and Göcek location pages describe an annual maintenance package for wintering boats: end-of-season membrane cleaning, filter replacement and system winterisation on-site. Booking from October is recommended — Bodrum, Göcek.

Season Opening — After Lay-Up

Our FAQ lists pre-season preparation as a separate periodic task. Checks aligned with the pre-season checklist:

Check Why
Lay-up / preservative drained?Residual chemical affects production and taste
Pre-filters renewed?Filters stored over winter are inefficient
HP pump oil level250-hour rule — maintenance guide
Electrical connectionsMoisture and vibration can loosen contacts
Brine reject valve free?Common fault source — common mistakes
Test run + TDSChecklist: ~15 min test and TDS reading
Leak inspectionHP pump and hose connections

If TDS stays high after testing, try extra flush or filter replacement; if the issue persists, call for service — pre-season checklist.

Mistakes to Avoid

Our first-time user guide lists flush and winterisation errors that directly affect membrane life.

Shutting down without flush — salt remains on the membrane.
Skipping end-of-season lay-up — biofouling and drying risk.
Flushing with dirty pre-filters — rinse is ineffective.
Leaving brine reject closed — pressure and membrane load.
No spare filters on board — mid-season blockage.
Not monitoring membrane performance — late intervention.

Full list: First-Time Watermaker Mistakes.

Frequently Asked Questions

Yes — it is core membrane care. If auto flush is enabled, tune duration to your production profile; if disabled, plan manual fresh-water rinsing. Skipping flush can cause early membrane failure — spare parts guide.

Per Seacraft FAQ, if the unit will not be used for more than 4 weeks, winterisation is required to prevent bacterial growth inside the membranes. Shorter breaks usually need a final flush only; borderline lay-ups are best confirmed with service.

Auto flush helps membrane cleaning but does not replace dirty pre-filters, blocked brine lines or winterisation for long idle periods. SCW-50 PRO automatic salinity rejection monitors product quality — a complementary safeguard, not a substitute for flush discipline.

Membrane drying and biofouling risk increase; capacity may stay low at season opening. Preservative application is a mandatory step on the end-of-season checklist. Lay-up chemical is listed in the spare parts catalogue; application can be done during on-site service.

Seacraft provides on-site service at marinas across Turkey. Bodrum, Göcek and other locations describe end-of-season membrane cleaning, filter replacement and lay-up preparation. Scope is confirmed at booking based on model and condition — appointment form, locations.

Plan End-of-Season Lay-Up On Site

Membrane cleaning, filters and lay-up chemical — one appointment

Book an Appointment Call: +90 252 412 90 78